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Protein Folding in CLP(FD) with Empirical Contact Energies 1-gen-2004 A., DAL PALU'; Dovier, Agostino; Fogolari, Federico
Protein Folding Simulation in CCP 1-gen-2004 A., Dal Palù; Dovier, Agostino; Fogolari, Federico
Comparative Molecular Dynamics Simulations of HIV-1 Integrase and the T66I/M154I Mutant: Binding Modes and Drug Resistance to a Diketo Acid Inhibitor 1-gen-2005 Brigo, A; Lee, K. W.; Fogolari, Federico; Mustata, G. I.; Briggs, J. M.
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators 1-gen-2005 Fogolari, Federico; Tosatto, S. C. E.; Colombo, G.
MM/PBSA Analysis of Molecular Dynamics Simulations of Bovine beta-Lactoglobulin: Free Energy Gradient in Conformational Transitions? 1-gen-2005 Fogolari, Federico; Baginski, M.; Molinari, H.; Moroni, E.; Ragona, L.; Wojciechowski, M.
Agent-Based Protein Folding Simulation 1-gen-2005 L., Bortolussi; A., DAL PALU'; Dovier, Agostino; Fogolari, Federico
Application of MM/PBSA colony free energy to loop decoy discrimination: Toward correlation between energy and root mean square deviation. 1-gen-2005 Fogolari, Federico; Tosatto, S.
Thermodynamic and electrostatic properties of ternary Oxytricha nova TEBP-DNA complex 1-gen-2005 Wojciechowski, M; Fogolari, Federico; Baginski, M.
Solution structure of beta(2)-microglobulin and insights into fibrillogenesis 1-gen-2005 Esposito, Gennaro; Corazza, Alessandra; Viglino, Paolo; Verdone, Giuliana; Pettirossi, Fabio; Fogolari, Federico; Makek, A.; Giorgetti, S.; Mangione, P.; Stoppini, M.; Bellotti, V.
Functional analysis of a novel RUNX2 missense mutation found in a family with cleidocranial dysplasia 1-gen-2005 Puppin, C; Pellizzari, L; Fabbro, D; Fogolari, F; Tell, G; Tessa, A; Santorelli, F. M.; Damante, G
NMR dynamic studies suggest that allosteric activation regulates ligand binding in chicken liver bile acid binding protein. 1-gen-2006 Catalano, M.; Cicero, D.; Eliseo, T.; Fogolari, Federico; Foote, J.; Luppi, M.; Molinari, H.; Ragona, L.; Zetta, L.
Collagen plays an active role in the aggregation of beta(2)-microglobulin under physiopathological conditions of dialysis-related amyloidosis 1-gen-2006 Relini, A; Canale, C; DE STEFANO, S; Rolandi, R; Giorgetti, S; Stoppini, M; Rossi, A; Fogolari, Federico; Corazza, Alessandra; Esposito, Gennaro; Gliozzi, A; Bellotti, V.
Molecular analysis of a human PAX6 homeobox mutant 1-gen-2006 D'Elia, Av; Puppin, C; Pellizzari, L; Pianta, A; Bregant, E; Lonigro, Incoronata; Tell, Gianluca; Fogolari, Federico; VAN HEYNINGEN, V; Damante, Giuseppe
Scoring predictive models using a reduced representation of proteins: model and energy definition 1-gen-2007 Fogolari, Federico; L., Pieri; Dovier, Agostino; L., Bortolussi; Giugliarelli, Gilberto; Corazza, Alessandra; Esposito, Gennaro; Viglino, Paolo
Estimation of 3JHN-Halpha and 3JHalpha-Hbeta coupling constants from heteronuclear TOCSY spectra 1-gen-2007 Pagano, K; Fogolari, Federico; Corazza, Alessandra; Viglino, Paolo; Esposito, Gennaro
Agent-based Protein Structure Prediction 1-gen-2007 Bortolussi, Luca; Dovier, Agostino; Fogolari, Federico
dentification of DNA-binding protein target sequences by physical effective energy functions. Free energy analysis of lambda repressor-DNA complexes 1-gen-2007 Moroni, E; Caselle, M; Fogolari, Federico
Molecular Dynamics Simulation Suggests Possible Interaction Patterns at Early Steps of {beta}2-Microglobulin Aggregation 1-gen-2007 Fogolari, F; Corazza, A; Viglino, P; Zuccato, P; Pieri, L; Faccioli, P; Bellotti, V; Esposito, G
The Controlling Roles of Trp60 and Trp95 in β2-Microglobulin Function, Folding and Amyloid Aggregation Properties 1-gen-2008 Esposito, Gennaro; Ricagno, Stefano; Corazza, Alessandra; Rennella, Enrico; GUMRAL GOKKAYA, Devrim; Mimmi, Maria Chiara; Betto, Elena; Pucillo, Carlo Ennio Michele; Fogolari, Federico; Viglino, Paolo; Raimondi, Sara; Giorgetti, Sofia; Bolognesi, Benedetta; Merlini, Giampaolo; Stoppini, Monica; Bolognesi, Martino; Bellotti, Vittorio
Structural basis of human Pax8 redox regulation from the unbound paired box domain 1-gen-2008 Codutti, L; VAN INGEN, H; Vascotto, Carlo; Fogolari, Federico; Corazza, A; Tell, Gianluca; Quadrifoglio, F; Viglino, P; Boelens, R; Esposito, Gennaro
The catalytic site of glutathione peroxidases 1-gen-2008 Bosello, V; Flohe', L; Fogolari, Federico; Maiorini, M; Mauri, P; Roveri, A; Toppo, S; Tosatto, S; Ursini, F.
Helix mobility and recognition function of the rat thyroid transcription factor 1 homeodomain - hints from 15N-NMR relaxation studies 1-gen-2008 Gumral, D; Nadalin, L; Corazza, Alessandra; Fogolari, Federico; Damante, Giuseppe; Viglino, Paolo; Esposito, Gennaro
The solution structure of DNA-free Pax-8 paired box domain accounts for redox regulation of transcriptional activity in the pax protein family 1-gen-2008 Codutti, L.; VAN INGEN, H.; Vascotto, Carlo; Fogolari, Federico; Corazza, Alessandra; Tell, Gianluca; Quadrifoglio, F.; Viglino, P.; Boelens, R.; Esposito, Gennaro
Molecular models for intrastrand DNA G-quadruplexes 1-gen-2009 Fogolari, Federico; Haridas, H; Corazza, Alessandra; Viglino, P; Corà, D; Caselle, M; Esposito, Gennaro; Xodo, Luigi
Equilibrium unfolding thermodynamics of beta(2)Microglobulin analyzed through native-state H/D exchange 1-gen-2009 Rennella, Enrico; Corazza, Alessandra; Fogolari, Federico; Viglino, Paolo; Giorgetti, S; Stoppini, M; Bellotti, V; Esposito, Gennaro
NMR-based homology model for the solution structure of the C-terminal globular domain of EMILIN1 1-gen-2009 Verdone, Giuliana; Corazza, Alessandra; Colebroke, S. A.; Cicero, D; Eliseo, T; Boyd, J; Doliana, R; Fogolari, Federico; Viglino, Paolo; Colombatti, Alfonso; Campbell, I. D.; Esposito, Gennaro
Comparison of the structural and functional properties of RNase A and BS-RNase: a stepwise mutagenesis approach. 1-gen-2009 Colamarino, Ra; Ercole, C; Fogolari, Federico; Picone, D; Pizzo, E; Spadaccini, R.
Electric dipole reorientation in the interaction of botulinum neurotoxins with neuronal membranes. 1-gen-2009 Fogolari, Federico; Montecucco, C; Muraro, L; Tosatto, Sc
Conformational stability of Neuroglobin helix F: possible effects on the folding pathway within the globin family 1-gen-2009 Codutti, Luca; Picotti, P; Marin, O; Dewilde, S; Fogolari, Federico; Corazza, Alessandra; Viglino, Paolo; Moens, L; Esposito, Gennaro; Fontana, F.
CLP-based protein fragment assembly 1-gen-2010 DAL PALU', A.; Dovier, Agostino; Fogolari, Federico; Pontelli, E.
Native-unlike long-lived intermediates along the folding pathway of the amyloidogenic protein beta2-microglobulin revealed by real-time two-dimensional NMR 1-gen-2010 Corazza, Alessandra; Rennella, Enrico; Schanda, P; Mimmi, Maria Chiara; Cutuil, T; Raimondi, S; Giorgetti, S; Fogolari, Federico; Viglino, Paolo; Frydman, L; Gal, M; Bellotti, V; Brutscher, B; Esposito, Gennaro
Structural and dynamics characteristics of Acylphosphatase from Sulfolobus solfataricus in the monomeric state and in the initial native-like aggregates. 1-gen-2010 Pagano, Katiuscia; Bemporad, F; Fogolari, Federico; Esposito, Gennaro; Viglino, Paolo; Chiti, F; Corazza, Alessandra
Folding and fibrillogenesis: clues from beta2-microglobulin 1-gen-2010 Rennella, E; Corazza, A; Giorgetti, S; Fogolari, F; Viglino, P; Porcari, R; Verga, L.; Stoppin, I M; Bellotti, V; Esposito, G
Introducing FIASCO: Fragment-based Interactive Assembly for protein Structure prediction with COnstraints 1-gen-2011 Michael, Best; Kabi, Bhattarai; Federico, Campeotto; ALESSANDRO DAL, Palù; Hung, Dang; Dovier, Agostino; Fioretto, Ferdinando; Fogolari, Federico; Trung, Le; Enrico, Pontelli
Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene 1-gen-2011 Marroni, Fabio; Pinosio, Sara; Zaina, Giusi; Fogolari, Federico; Felice, Nicoletta; Cattonaro, Federica; Morgante, Michele
Role of Dynamics in the Autoinhibition and Activation of the Exchange Protein Directly Activated by Cyclic AMP (EPAC) 1-gen-2011 Vanschouwen, B; Selvaratnam, R; Fogolari, Federico; Melacini, G.
Exploring Protein Fragment Assembly Using CLP 1-gen-2011 ALESSANDRO DAL, Palù; Dovier, Agostino; Fogolari, Federico; Enrico, Pontelli
Effect of tetracyclines on the dynamics of formation and destructuration of beta2-microglobulin amyloid fibrils 1-gen-2011 Giorgetti, S.; Raimondi, S.; Pagano, Katiuscia; Relini, A.; Bucciantini, M.; Corazza, Alessandra; Fogolari, Federico; Codutti, Luca; Salmona, M.; Mangione, P.; Colombo, L.; De Luigi, A.; Porcari, R.; Gliozzi, A.; Stefani, M.; Esposito, Gennaro; Bellotti, V.; Stoppini, M.
Molecular dynamics simulation of β₂-microglobulin in denaturing and stabilizing conditions 1-gen-2011 Fogolari, Federico; Corazza, Alessandra; Varini, N; Rotter, M; Gumral, D; Codutti, L; Rennella, E; Viglino, Paolo; Bellotti, V; Esposito, Gennaro
Protein Structure Analysis with Constraint Programming. 1-gen-2012 A., Dal Palu'; Dovier, Agostino; Fogolari, Federico; E., Pontelli
Bluues Server: electrostatic properties of wild-type and mutated protein structures. 1-gen-2012 Walsh, I; Minervini, G; Corazza, Alessandra; Esposito, Gennaro; Tosatto, Sce; Fogolari, Federico
Studying interactions by molecular dynamics simulations at high concentration 1-gen-2012 Fogolari, Federico; Corazza, Alessandra; Toppo, S; Tosatto, Sce; Viglino, P; Ursini, F; Esposito, Gennaro
Single-shot NMR measurement of protein unfolding landscapes. 1-gen-2012 Rennella, Enrico; Corazza, Alessandra; Codutti, Luca; Causero, Araldo; Bellotti, V; Stoppini, M; Viglino, Paolo; Fogolari, Federico; Esposito, Gennaro
Mitochondrial F0F1-ATP synthase is a molecular target of 3-iodothyronamine, an endogenous metabolite of thyroid hormone 1-gen-2012 Cumero, S; Fogolari, Federico; Domenis, Rossana; Zucchi, R; Mavelli, Irene; Contessi, S.
Rapid Protein Oligomer Formation of Human Muscle Acylphosphatase Induced by Heparan Sulfate 1-gen-2012 Motamedi Shad, N.; Garfagnini, T.; Penco, A.; Relini, A.; Fogolari, Federico; Corazza, Alessandra; Esposito, Gennaro; Bemporad, F.; Chiti, F.
Bluues: a program for the analysis of the electrostatic properties of proteins based on generalized Born radii 1-gen-2012 Fogolari, Federico; Corazza, Alessandra; Yarra, V; Jalaru, A; Viglino, P; Esposito, Gennaro
The Projection Analysis of NMR Chemical Shifts Reveals Extended EPAC Autoinhibition Determinants 1-gen-2012 Selvaratnam, R; Vanschouwen, B; Fogolari, Federico; Mazhab Jafari, Mt; Das, R; Melacini, G.
Fast structure similarity searches among protein models: efficient clustering of protein fragments. 1-gen-2012 Fogolari, Federico; Corazza, Alessandra; Viglino, P; Esposito, Gennaro
Determining the energy landscape of proteins by a fast isotope exchange NMR approach 1-gen-2012 Rennella, E.; Corazza, Alessandra; Codutti, L.; Bellotti, V.; Stoppini, M.; Viglino, P.; Fogolari, Federico; Esposito, Gennaro
Structure, folding dynamics, and amyloidogenesis of D76N β2-microglobulin: roles of shear flow, hydrophobic surfaces, and α-crystallin 1-gen-2013 P. P., Mangione; Esposito, Gennaro; A., Relini; S., Raimondi; R., Porcari; S., Giorgetti; Corazza, Alessandra; Fogolari, Federico; A., Penco; Y., Goto; Y. H., Lee; H., Yagi; C., Cecconi; M. M., Naqvi; J. D., Gillmore; P. N., Hawkins; F., Chiti; R., Rolandi; G. W., Taylor; M. B., Pepys; M., Stoppini; V., Bellotti
Mostrati risultati da 51 a 100 di 162
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